SNP Profiles of GU 136 /H   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
2._GU_136_/H
__AATTTT_AACCGGCC__AA_
3._GU_136_/H
__AATTTT_AACCGGCC__AA_
4._GU_136_/H
__AATTTT_AACCGGCC__AA_
5._GU_136_/H
__AATTTT_AACCGGCC__AA_
6._GU_136_/H
__AATTTT_AACCGGCC__AA_
7._GU_136_/H
__AATTTT_AACCGGCC__AA_
8._GU_136_/H
__AATTTT_AACCGGCC__AA_
9._GU_136_/H
__AATTTT_AACCGGCC__AA_
10._GU_136_/H
__AATTTT_AACCGGCC__AA_
11._GU_136_/H
__AATTTT_AACCGGCC__AA_
12._GU_136_/H
__AATTTT_AACCGGCC__AA_
13._GU_136_/H
__AATTTT_AACCGGCC__AA_
14._GU_136_/H
__AATTTT_AACCGGCC__AA_
15._RUQ_221
__AATTTT_AACCGGCC__AA_
16._GU_136_/H
__AATTTT_AACCGGCC__AA_
17._GU_136_/H
__AA_TT_AACCGGCC__AA_
18._RUQ_221
__AA_____GG_GG___
19._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
27._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
28._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
30._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
31._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
32._GC-03-019-2-08
TTCCAA_TTGGAACCGGCCGGGGAACC
33._GC-03-19-2-8
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
GGAACCGGCCCCCCCCCCGGAATTAAGG
1._GC-03-019-2-08
GGAACCGGCCCCCCCC_GGAATTAAGG
2._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
3._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
4._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
5._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
6._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
7._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
8._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
9._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
10._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
11._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
12._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
13._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
14._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
15._RUQ_221
GGAACCGGCCCC_CC_GG___GG
16._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
17._GU_136_/H
GGAACCGGCCCC_CC_GG___GG
18._RUQ_221
_AA__CCCCCC_CCGGAA_AAGG
19._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
20._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
21._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
22._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
23._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
24._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
25._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
26._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
27._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
28._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
29._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
30._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
31._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
32._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
33._GC-03-19-2-8
_AA_CCCCCCGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCAACCCCGGGGTTTTTTCCCCGGGG
1._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
2._GU_136_/H
_CCAA_CC___TT__CCGGGG
3._GU_136_/H
_CCAA_CC___TT__CCGGGG
4._GU_136_/H
_CCAA_CC___TT__CCGGGG
5._GU_136_/H
_CCAA_CC___TT__CCGGGG
6._GU_136_/H
_CCAA_CC___TT__CCGGGG
7._GU_136_/H
_CCAA_CC___TT__CCGGGG
8._GU_136_/H
_CCAA_CC___TT__CCGGGG
9._GU_136_/H
_CCAA_CC___TT__CCGGGG
10._GU_136_/H
_CCAA_CC___TT__CCGGGG
11._GU_136_/H
_CCAA_CC___TT__CCGGGG
12._GU_136_/H
_CCAA_CC___TT__CCGGGG
13._GU_136_/H
_CCAA_CC___TT__CCGGGG
14._GU_136_/H
_CCAA_CC___TT__CCGGGG
15._RUQ_221
_CCAA_CC___TT__CCGGGG
16._GU_136_/H
_CCAA_CC______CCGGGG
17._GU_136_/H
_CCAA_CC___TT__CCGGGG
18._RUQ_221
__AACC____TT___GG_
19._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
20._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
21._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
22._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
23._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
24._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
25._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
26._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
27._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
28._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
29._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
30._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
31._GC-03-019-2-08
CCCCAACCCCGGGGTT_TTCCCCGGGG
32._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
33._GC-03-19-2-8
_GGAA_GGCCGG_AAAAGGGGCCGG

Input profile: GU_136_/H RUQ_221

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_136_/H GC-03-019-2-08

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

4._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

5._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

6._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

7._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

8._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

9._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

10._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

11._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

12._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

13._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

14._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

15._GU_136_/H RUQ_221

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_136_/H

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

17._GU_136_/H

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

18._GU_136_/H RUQ_221

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

32._GU_136_/H GC-03-019-2-08

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

33._GU_136_/H GC-03-19-2-8

44.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484